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Fast and accurate deduction of peptides (and proteins) present in a biological mixture such as a tumor, saliva or fungus sample has been the cornerstone in computational omics research for over 30 years. The biological mixture is exposed to a shotgun proteomics...
High Performance Computing Algorithms for Big Data Proteomics, Proteogenomics, and Meta-Proteomics Proteogenomics is an emerging systems-biology research field at the intersection of proteomics and genomics. Two high-throughput technologies, Mass Spectrometry (MS) for...
Historically, there have been two contrasting approaches for inferring peptides from mass-spectrometry data, i.e., de novo sequencing and database searching. The de novo approach tries to transform spectral space into peptide space by predicting individual amino acids...